Direct access to iPath2

Use the form below to submit your element selection and other paramters directly to iPath2 interactive interface. If using this script programmaticaly, make sure you use a POST request to submit all paramaters. You have to specify the 'map_type' and either 'selection' or 'tax_filter', all other paramaters are optional.

Parameter	POST parameter name	Input
Element selection	selection		Main element selection. You can either type it into the box, or upload a plain text file with your selection.
Default opacity	default_opacity		Opacity setting for the non-selected parts of the map. Zero represents full transparency, while one is fully opaque
Default edge width	default_width	px	Edge width for the non-selected parts of the map. Default is 3px.
Default node radius	default_radius	px	Compound radius for the non-selected parts of the map. Default is 7px.
Keep original colors	keep_colors		When checked, non-selected parts of the map will not change color to the default one.
Default color	default_color		Non-selected parts of the map will use this color by default. Use standard hexadecimal RGB notation.
Background color	background_color		Background color for the maps. Use standard hexadecimal RGB notation.
Select whole pathways	whole_pathways		If checked, any pathway with at least one matching edge or compound will be highlighted.
Query reaction compounds	query_reactions		If checked, compound presence within each edges reactions will also be checked
Species filter	tax_filter		You can use either NCBI tax ID or KEGG 3 letter species code. Only pathways present in selected species will be included in the map.
Map type	map_type	interactive SVG PNG	If you want to directly generate a vector (SVG) or bitmap (PNG) image, select the desired format
Include metabolic map	include_metabolic		include metabolic map in the graphical output
Include regulatory map	include_regulatory		include regulatory pathways map in the graphical output
Include secondary metabolites map	include_secondary		include secondary metabolite biosynthesis map in the graphical output
PNG resolution	png_dpi	DPI	resolution of exported PNG map (in DPI, dots per inch)

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